PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15392.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 281aa    MW: 31021.8 Da    PI: 6.7512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15392.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-141562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+ Ed+ l  ++k +G g W+  +++ g++R++k+c++rw++yl
  mrna15392.1-v1.0-hybrid 15 RGAWTALEDKVLTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 62
                             89********************************************97 PP

2Myb_DNA-binding48.52e-1568112147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  mrna15392.1-v1.0-hybrid  68 RGNISGDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 112
                              6777889***************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.41062IPR017930Myb domain
SuperFamilySSF466893.52E-2713109IPR009057Homeodomain-like
SMARTSM007172.2E-111464IPR001005SANT/Myb domain
PfamPF002491.3E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-211669IPR009057Homeodomain-like
CDDcd001671.08E-81762No hitNo description
PROSITE profilePS5129423.91463117IPR017930Myb domain
SMARTSM007175.6E-1567115IPR001005SANT/Myb domain
PfamPF002491.4E-1368112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2370116IPR009057Homeodomain-like
CDDcd001671.96E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRSPCCFKQ EGLNRGAWTA LEDKVLTSYI KAHGEGKWRN LPKRAGLKRC GKSCRLRWLN  60
YLRPDIKRGN ISGDEEELII RLHNLLGNRW SLIAGRLPGR TDNEIKNYWN TTLAKKAKPE  120
SHSGSSKETS PAPTRFRPRK ASAAATTQPQ VIRTKATRLT RMPVPSLPLL IDDCSTSTTA  180
LELQVPQTQL VSSLPEDAVN TQVYFQGTDA MNFGCNGFQA TAGDDEDAKG DYDIPLDDGM  240
LNDWTGNGNC DLENYGASLD LDSLSFLLDS DDWLGQENSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9892810.0JQ989281.1 Fragaria x ananassa transcription factor MYB9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303468.10.0PREDICTED: transcription factor TT2-like
SwissprotQ9FJA21e-62TT2_ARATH; Transcription factor TT2
TrEMBLI3WCS20.0I3WCS2_FRAAN; Transcription factor MYB9
STRINGVIT_04s0008g01800.t011e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-63MYB family protein